File:Three-Dimensional-Stochastic-Off-Lattice-Model-of-Binding-Chemistry-in-Crowded-Environments-pone.0030131.s001.ogv

English: Simulation movie of 3DSOLM in low and high crowding conditions. The movie shows sample trajectories for two simulations, the left side representing a low crowding (0.1 CR) case and the right side representing a high crowding (0.1 CR+0.35 CI) case. All other parameters are set to their default values: B = 0.7, M = 1.0 ns, D = 4.6×10−11 m2s−1, α = 2.0, β = 1.0, dth = 0.125 nm in a 50 nm×50 nm×50 nm simulation box. The first half of the movie shows each system in its initial pre-equilibration state and the second half of the movie shows the same systems in a quasi-equilibrium state. Cyan spheres are reactant monomers, magenta spheres are reactant dimers, and black spheres are inert crowding particles. Diffusion limit spheres are shown in green for all particles.