File:A replica exchange molecular dynamics simulation of the folding of.webm
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Size of this JPG preview of this WEBM file: 800 × 443 pixels. Other resolutions: 320 × 177 pixels | 640 × 354 pixels | 1,024 × 566 pixels | 1,280 × 708 pixels | 2,560 × 1,416 pixels | 3,872 × 2,142 pixels.
Original file (WebM audio/video file, VP8, length 1 min 40 s, 3,872 × 2,142 pixels, 3.96 Mbps overall, file size: 47.25 MB)
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English: A replica exchange molecular dynamics simulation of a 15 amino acid β-hairpin protein (GB1p). The simulation was performed using NAMD with the PACE coarse-grain model. The simulation contains 12 replicas with temperatures ranging from 300 K to 600 K.
The simulation shows the first 12.5 ns of the simulation. The protein is only partially folded at the end of the simulation. A longer simulation would be needed to reach convergence. The simulation was rendered using a tube representation with VMD 1.9.2. The tube is colored according to its instantaneous secondary structure defined by STRIDE. |
| Date | |
| Source | Own work |
| Author | Christopher Rowley |
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| Date/Time | Thumbnail | Dimensions | User | Comment | |
|---|---|---|---|---|---|
| current | 18:29, 22 November 2014 | 1 min 40 s, 3,872 × 2,142 (47.25 MB) | Cnrowley (talk | contribs) | User created page with UploadWizard |
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