File:1-s2.0-S1567134813003729-gr3 (14424526301).jpg

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Source: Jiale Ma, Min Sun, Yinli Bao, ZiHao Pan, Wei Zhang, Chengping Lu, Huochun Yao (2013) Genetic diversity and features analysis of type VI secretion systems loci in avian pathogenic Escherichia coli by wide genomic scanning. Infection, Genetics and Evolution <a href="https://dx.doi.org/10.1016/j.meegid.2013.09.031" rel="nofollow">dx.doi.org/10.1016/j.meegid.2013.09.031</a> Published by Elsevier

Fig. 3.

The phylogenetic trees construction and comparative genomics analysis. (A) Sequence relationship of all T6SS clusters. The whole T6SS nucleotide sequences were aligned with ClustalW, and the MEGA software version 5.0 was used to perform a 2000 bootstrap phylogenetic analysis using the neighbor joining method. Large clades are indicated by colored and named by representative isolates. (B) Comparative genome alignments of 10 T6SS loci selected according to the result of Fig. 3A. The color key for the functional classes of genes and relevant information are the same as shown in Fig. 1. Phylogenetic relationships of the T6SS loci were obtained using a neighbor-joining tree (bootstrap N = 1000) based on a ClustalW alignment of the complete T6SS nucleotide sequences. Visual representation of the alignments using nucleotide similarities (tblastx) of the T6SS loci and were carried out with the Artemis Comparison Tool (ACT) ( Carver et al., 2005).
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Source 1-s2.0-S1567134813003729-gr3
Author Phylogeny Figures

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This image was originally posted to Flickr by phylofigures at https://flickr.com/photos/123636286@N02/14424526301. It was reviewed on 19 December 2020 by FlickreviewR 2 and was confirmed to be licensed under the terms of the cc-by-2.0.

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