File:Fmicb-05-00112-g001 (14420742021).jpg

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Front. Microbiol., 28 March 2014 | doi:10.3389/fmicb.2014.00112 Morphology, phylogeny, and ecology of the aphelids (Aphelidea, Opisthokonta) and proposal for the new superphylum Opisthosporidia Sergey A. Karpov, Maria A. Mamkaeva, Vladimir V. Aleoshin, Elena Nassonova, Osu Lilje and Frank H. Gleason

FIGURE 1. Position of Amoeboaphelidium protococcarum on the tree inferred from rDNA analyses by Bayesian and ML methods (after: Karpov et al., 2013). PhyloBayes tree topology was calculated from an alignment of 144 sequences and 4,384 nucleotide characters. Node support values are given as follows: Bayesian posterior probabilities (PhyloBayes/MrBayes) followed by bootstrap values (RAxML). We used the GTR + CAT model without partition by genes for PhyloBayes calculations and the same model with partition by genes for RAxML calculations. The GTR + I + Γ12 model was used for MrBayes calculations. Filled circles indicate that all support values are above 98%; empty circles indicate that at least one support value is above 98%. Shown in gray are support values for clades not included in the consensus trees. Symbols in the inset indicate habitats for environmental sequences. Scale bar indicates substitutions per site.
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Source fmicb-05-00112-g001
Author Phylogeny Figures

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