File:Graphic functions of the phyloseq package Figure 4.jpg
Jump to navigation
Jump to search
Size of this preview: 472 × 599 pixels. Other resolutions: 189 × 240 pixels | 378 × 480 pixels | 605 × 768 pixels | 807 × 1,024 pixels | 1,614 × 2,048 pixels | 3,996 × 5,069 pixels.
Original file (3,996 × 5,069 pixels, file size: 1.81 MB, MIME type: image/jpeg)
Captions
Captions
Add a one-line explanation of what this file represents
Summary[edit]
| Description | Graphic functions of the phyloseq package.The phyloseq class is an experiment-level data storage class defined by the phyloseq package for representing phylogenetic sequencing data. Most functions in the phyloseq package expect an instance of this class as their primary argument. See the phyloseq manual The Global Patterns [47] and Enterotypes [91] datasets are included with the phyloseq package. The Global Patterns data was preprocessed such that each sample was transformed to the same total read depth, and OTUs were trimmed that were not observed at least 3 times in 20% of samples or had a coefficient of variation ? 3.0 across all samples. For the plot_tree and plot_bar subplots, only the Bacteroidetes phylum is shown. Each subplot title indicates the plot function that produced it. Complete details for reproducing this figure are provided in File S2. All of these functions return a ggplot object that can be further customized/modified by tools in the ggplot2 package [57]. See additional descriptions of each function in the body text, and at the phyloseq homepage [39]. |
| Date | |
| Source | Figure 4 |
| Author | PLOS ONE PHYLOGENY |
Licensing[edit]
This file is licensed under the Creative Commons Attribution 2.0 Generic license.
- You are free:
- to share – to copy, distribute and transmit the work
- to remix – to adapt the work
- Under the following conditions:
- attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
|
This image was originally posted to Flickr by plosone-phylo at https://flickr.com/photos/123621741@N08/14129497155. It was reviewed on 6 August 2016 by FlickreviewR and was confirmed to be licensed under the terms of the cc-by-2.0. |
File history
Click on a date/time to view the file as it appeared at that time.
| Date/Time | Thumbnail | Dimensions | User | Comment | |
|---|---|---|---|---|---|
| current | 01:14, 6 August 2016 | | 3,996 × 5,069 (1.81 MB) | Blythwood (talk | contribs) | Transferred from Flickr via Flickr2Commons |
You cannot overwrite this file.
File usage on Commons
There are no pages that use this file.
