File:ML-phylogenetic tree of (A) SPAV & rel. ArenaV, (B) CAV & rel. AquaRV+OrthoRV, (C) PsNV & rel. NidoV.jpg

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English: Maximum-likelihood phylogenetic tree based on MAFFT v7.42 alignments of the predicted replicase protein of (A) Salmon pescarenavirus and related arenaviruses, (B) Chinook Aquareovirus and related aqua and orthoreoviruses and (C) Pacific salmon nidovirus and related nidoviruses.—Sequences from the original study are marked with an asterisk, scale bars represent the number of amino substitutions per site, node labels show the bootstrap support and host groups are shown by colour. Trees are mid-point rooted for clarity only, and do not necessarily represent the ancestral relationship of the viruses.
Deutsch: Maximum-Likelihood-phylogenetischer Baum basierend auf MAFFT-v7.42-Alignments des vorhergesagten Replikase-Proteins von (A) Salmon pescarenavirus und verwandten Arenaviren, (B) Chinook Aquareovirus und verwandten Aqua- und Orthoreoviren und (C) Pacific salmon nidovirus und verwandten Nidoviren. – Sequenzen aus der ursprünglichen Studie sind mit einem Sternchen markiert, Maßstabsleisten geben die Anzahl an Amino-Substitutionen pro Stelle an, Knotenbeschriftungen zeigen den Bootstrap-Support, und Wirtsgruppen sind farblich hervorgehoben. Bäume sind nur zur klareren Darstellung Mittelpunkt-gewurzelt und geben nicht notwendigerweise die Abstammungsbeziehung der Viren wieder.
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Mordecai et al. eLife 2019;8:e47615. DOI: https://doi.org/10.7554/eLife.47615

Gideon J Mordecai, Kristina M Miller, Emiliano Di Cicco, Angela D Schulze, Karia H Kaukinen, Tobi J Ming, Shaorong Li, Amy Tabata, Amy Teffer, David A Patterson, Hugh W Ferguson, Curtis A Suttle (2019): Endangered wild salmon infected by newly discovered viruses. Version 1. In: eLife. eLife Sciences Publications Ltd., 3. September 2019, 8:e47615, doi:10.7554/eLife.47615
Author Gideon J Mordecai, Kristina M Miller, Emiliano Di Cicco, Angela D Schulze, Karia H Kaukinen, Tobi J Ming, Shaorong Li, Amy Tabata, Amy Teffer, David A Patterson, Hugh W Ferguson, Curtis A Suttle. Copyright Mordecai et al..
Source data 1. Arenavirus amino acid alignment.
DOI: https://doi.org/10.7554/eLife.47615.006
Source data 2. Nidovirus amino acid alignment.
DOI: https://doi.org/10.7554/eLife.47615.007
Source data 3. Reovirus amino acid alignment.
DOI: https://doi.org/10.7554/eLife.47615.008
Source data 4. Arenavirus phylogenetic tree.
DOI: https://doi.org/10.7554/eLife.47615.009
Source data 5. Reovirus phylogenetic tree.
DOI: https://doi.org/10.7554/eLife.47615.010
Source data 6. Nidovirus phylogenetic tree.
DOI: https://doi.org/10.7554/eLife.47615.011
Figure supplement 1. Genome organisation and coverage.
DOI: https://doi.org/10.7554/eLife.47615.004
Figure supplement 1—source data 1. Viral genomic nucleotide sequences.
DOI: https://doi.org/10.7554/eLife.47615.005

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current14:55, 3 June 2020Thumbnail for version as of 14:55, 3 June 20201,500 × 946 (233 KB)Markus Prokott (talk | contribs){{Information |description ={{en|1=Maximum-likelihood phylogenetic tree based on MAFFT v7.42 alignments of the predicted replicase protein of (A) Salmon pescarenavirus and related arenaviruses, (B) Chinook Aquareovirus and related aqua and orthoreoviruses and (C) Pacific salmon nidovirus and related nidoviruses.—Sequences from the original study are marked with an asterisk, scale bars represent the number of amino substitutions per site, node labels show the bootstrap support and host group...

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