File:OPSR.Botourmia.Fig4.v5.png
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Captions
Captions
Phylogenetic relationships among members of the four genera in the family Botourmiaviridae.
Summary[edit]
| Description |
English: Botourmiaviridae. Phylogenetic relationships among members of the four genera in the family Botourmiaviridae. Maximum-likelihood phylogenetic tree based on the core RdRP motifs of members of the family Botourmiaviridae, other related viruses, and representatives of the families Leviviridae and the polyphyletic Narnaviridae. The viral RdRP sequences were aligned using MAFFT version 7 employing the E-INS-I algorithm. All alignments were trimmed so that they only contained the conserved RdRP region. All ambiguously aligned regions were then removed using the TrimAl program. The Maximum-Likelihood (ML) tree was inferred with PhyML 3.0 using eBayes method and the LG (G+I) protein substitution model, with SPRs algorithms and 8 categories of γ-distributed substitution rates. The reliability of internal branches was evaluated based on SH-aLRT supports. Numbers at the nodes indicate highly supported bootstrap values over 70% (1000 replicates) |
| Date | |
| Source | https://talk.ictvonline.org/ictv-reports/ictv_online_report/positive-sense-rna-viruses/w/botourmiaviridae |
| Author | María A. Ayllón, Massimo Turina, Jiatao Xie, Luca Nerva, Shin-Yi Lee Marzano, Livia Donaire, and Daohong Jiang |
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