File:A-Real-Time-All-Atom-Structural-Search-Engine-for-Proteins-pcbi.1003750.s008.ogv

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English: Example use of the PyMOL Suns plugin. The search process mirrors Figure 3, with the exception of the final search, which is performed at an RMSD cutoff of 0.4 Å. The process begins by selecting a guanidium group and performing a search to visualize neighboring motifs, followed by selection of a nearby carboxylic acid (see: Figure 3A). Repeating the search reveals several matching salt bridges. Search results are reoriented to show the distribution of linker preferences for arginine and one such linker is selected (see: Figure 3B). The final search includes the linker and the matching results are reoriented to center on several backbone motifs that complete the salt bridge. The video has not been sped up, cut, or edited in any way.
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Source Video S1 from Gonzalez G, Hannigan B, DeGrado W (2014). "A Real-Time All-Atom Structural Search Engine for Proteins". PLOS Computational Biology. DOI:10.1371/journal.pcbi.1003750. PMID 25079944. PMC: 4117414.
Author Gonzalez G, Hannigan B, DeGrado W
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Creative Commons CC-Zero This file is made available under the Creative Commons CC0 1.0 Universal Public Domain Dedication.
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current01:43, 11 December 201437 s, 876 × 534 (10.81 MB)Open Access Media Importer Bot (talk | contribs)Automatically uploaded media file from Open Access source. Please report problems or suggestions here.

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VP9 480P 1.25 Mbps Completed 21:51, 15 August 2018 45 s
Streaming 480p (VP9) 1.25 Mbps Completed 03:50, 17 December 2023 1.0 s
VP9 360P 605 kbps Completed 21:51, 15 August 2018 30 s
Streaming 360p (VP9) 606 kbps Completed 17:38, 17 December 2023 1.0 s
VP9 240P 292 kbps Completed 21:51, 15 August 2018 31 s
Streaming 240p (VP9) 292 kbps Completed 05:36, 9 December 2023 1.0 s
WebM 360P 505 kbps Completed 01:44, 11 December 2014 41 s
Streaming 144p (MJPEG) 836 kbps Completed 08:48, 29 October 2023 1.0 s

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