File:Expected heterozygosity of Mlabri.png

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English: Heterozygosity in 17 populations. Expected heterozygosity for SNPs (HSe) were calculated based on allele frequencies of 55,561 SNPs shared by 17 populations and the results were shown in Figure A. The HSe in Mlabri (0.197) is lower than that of any of other populations in which HSe is at least 0.250 (HM). The expected heterozygosity for haplotypes (HHe) were calculated based on haplotypes in 500-kb genomic regions (Methods) and the results are shown in Figure B. The HHe in Mlabri (0.666) is also much lower than that of any of other populations in which HHe is at least 0.820 (TN). The HHe comparison obtained from larger size of genomic regions (1 Mb) show the similar results (see Additional file 1, Figure S1). All the above comparisons are statistically significant (t-test, p < 10-5). In table at the bottom of each plot displayed the average and the standard deviation of He in each population sample. For population IDs, see below.
Date Published: 19 March 2010
Source Xu S, Kangwanpong D, Seielstad M, et al. Genetic evidence supports linguistic affinity of Mlabri - a hunter-gatherer group in Thailand. BMC Genetics. 2010;11:18. doi:10.1186/1471-2156-11-18. https://bmcgenet.biomedcentral.com/articles/10.1186/1471-2156-11-18
Author Shuhua Xu, Daoroong Kangwanpong, Mark Seielstad, Metawee Srikummool, Jatupol Kampuansai, Li JinEmail author and The HUGO Pan-Asian SNP Consortium
Other versions
  • Expected heterozygosity
    Expected heterozygosity
  • Neighbor-Joining tree
    Neighbor-Joining tree
  • PCA plot
    PCA plot
  • Poopulation structure
    Poopulation structure
  • Maximum likelihood tree
    Maximum likelihood tree
  • Geographical distribution of Thailand population samples (Blue dot is Mlabri)
    Geographical distribution of Thailand population samples (Blue dot is Mlabri)

Population ID

[edit]

Population ID

Ethnicity

Language family

Language

Sample-size

JPT

Japanese

Japonic

Japanese

44

CHB

Han

Sino-Tibetan

Chinese

45

HM

Hmong

Hmong-Mien

Hmong

20

YA

Yao

Hmong-Mien

Iu-Mien

19

TL

Tai Lue

Tai-Kadai

Lue

20

TY

Tai Yong

Tai-Kadai

Yong

18

TK

Tai Kern

Tai-Kadai

Kern

18

TU

Tai Yuan

Tai-Kadai

Yuan

20

PL

Palong

Austro-Asiatic

Palong

18

KA

Karen

Sino-Tibetan

Karen

20

LW

Lawa

Austro-Asiatic

Lawa

19

PP

Plang

Austro-Asiatic

Blang

18

TN

Htin

Austro-Asiatic

Mal

18

MA

Mlabri

Austro-Asiatic

Mlabri

18

MO

Mon

Austro-Asiatic

Mon

19

CEU

European

Indo-European

English

60

YRI

Yoruba

Niger-Congo

Yoruba

60

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